Welcome! WormExp v1.0 integrates all published expression data for C. elegans, which cover most topics in C. elegans research, e.g. immunity, aging, development, food and stress response. Current version is based on WS235. You can upload a gene list and run flexible queries: gene enrichment analyses either on the entire database or on selected gene sets represented in specific categories, search specific gene sets with the help of keywords, and export results. Need help? See the manual...

Upload

 

Please first upload a list of genes.

  • Separate IDs by a comma, space, tab or new line.
  • Possible input: wormbase ID, sequence name, gene name or mixed.
Uploading statistics:
Default

Analyse

 

Choose one or several categories from the list below or run a default query including all categories. For information on the categories, please see below.

CategoryNumber
Kim Mountains #32
Mutants #707
Microbes #205
TF Targets #161
Tissue #91
Development/Dauer/Aging #96
DAF/Insulin/food #146
Chemicals/stress #428
Other #114
In total#1980

Search

 

Based on your uploaded list , you can search WormExp by keywords . Keywords include gene set names (e.g. pmk-1 Up), category (e.g. Kim Mountains) or keywords (e.g. daf-2, return all data sets containing 'daf-2'), in upper or lower case. Separate keywords by a comma .

Download

Download dataset as a zip file, including entire dataset and information.

Please note that all uploaded data and the generated results will be automatically deleted within 30 minutes due to limited memory!

Kim Mountains

Clusters of co-expressed genes from the gene expression map described in Kim et al., 2001. Science.


Mutants

Differentially expressed genes in C. elegans mutants or upon RNAi treatment.


Microbes

Differentially expressed genes upon exposure to bacteria, fungi, unicellular eukaryotes, or viruses


TF Targets

Transcription factor or RNA binding protein targets inferred by knock-down or knock-out of the respective transcription factors and ChIP.


Tissue

Tissue-specific gene expression.


Development/Dauer/Aging

Gene expression in various stages during development, including the dauer stage, and during aging.


DAF/Insulin/food

Differentially expressed genes in mutants of the DAF-2/Insulin-like receptor pathway or in response to food or starvation.


Chemicals/stress

Differentially expressed genes upon exposure to chemicals or other stressors.


Other

All gene sets, which are not included in any category.


Logs:

  • New sets are added on 2016.06.09!
  • Adding new function to Search: start key words by @set (e.g., @set,elt-2) to explore related data sets without input IDs!